Welcome to VAnalytica

This is a dedicated platform for advanced pathogen analysis and collaborative data management. This site is designed to provide robust tools for running complex genomics analysis workloads and a secure environment for storing and sharing crucial data. Harness the power of cutting-edge technology and collaborative features to accelerate your discoveries and enhance the impact of your research in pathogen genomics.

Variant Tracking from Public Sources

This tool allows the user to generate up to date plots of variant prevalence and predicted variant prevalence for the US and all 50 states.

Re Estimates (Hospital Admissions & ED visits)

This set of tools generate Reproductive number estimates based on surveillance data for the selected states. One uses the NHSN hospital admissions dataset and the other uses the NSSP reports of ED visits with diagnosed COVID-19 data set to generate these estimates using the EpiNow2 tool. The estimates are provided as a timeseries in a CSV file, and an HTML report that summarizes the outputs of the EpiNow2 package.